Software for neuro-imaging

The following tools are among the software currently available in NeuroFedora:

dipy

sudo dnf install python3-dipy

Diffusion MRI utilities in Python.

fsleyes

sudo dnf install python3-fsleyes

FSLeyes, the FSL image viewer.

jnifti

sudo dnf install octave-jnifti

A fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter

mne-bids

sudo dnf install python3-mne-bids

Library for converting existing files into BIDS compatible structure.

nilearn

sudo dnf install python3-nilearn

Python module for fast and easy statistical learning on NeuroImaging data.

nistats

sudo dnf install python3-nistats

Modeling and Statistical analysis of fMRI data in Python.

octave-dicom

sudo dnf install octave-dicom

dicom: file io for medical images and other data.

pybids

sudo dnf install python3-pybids

Interface with datasets conforming to BIDS.

petlink

sudo dnf install python3-petlink

Decode and encode Petlink data streams (32 and 64 bit).

pynetdicom

sudo dnf install python3-pynetdicom

A Python implementation of the DICOM networking protocol.

Software that is in the queue for inclusion is listed here.