Utilities
The following general purpose utilties are also part of NeuroFedora.
|
The Bokeh Visualization Library |
|
|
Blue Brain Python Optimisation Library |
|
|
Numerical tool for performing uncertainty quantification using polynomial. |
|
|
GNU Octave: Scientific programming language. FOSS, compatible with Matlab scripts. |
|
|
An efficient Python module for manipulation and statistical analysis of graphs (a.k.a. networks). |
|
|
An HDF4/HDF5 viewer. |
|
|
A JSON/UBJSON/MessagePack encoder/decoder for GNU Octave. |
|
|
Missing data visualization module for Python. |
|
|
Virtual environment manager written in pure Python. |
|
|
Parameter exploration toolbox. |
|
|
A Progressbar library to provide visual progress to long running operations. |
|
|
Nature-inspired algorithms for hyper-parameter tuning of Scikit-Learn models. |
|
|
A powerful scientific environment written in Python, for Python, and designed by and for scientists, engineers and data analysts. |
|
|
A new XNAT client that exposes XNAT objects/functions as python objects/functions. |
|
|
wxnatpy is a wxPython widget which allows users to browse the contents of a XNAT repository. |
|
|
A portable data compression/decompression toolbox for GNU Octave. |
|
|
A portable library with easy-to-use data compression/decompression interfaces. |
Python Science Stack
The python-science package group includes commonly used scientific Python libraries.
This can be installed using dnf:
sudo dnf install @python-scienceThe individual packages may also be installed independently:
|
The Python plotting package. |
|
|
Jupyter notebook. |
|
|
Fundamental package for array computing with Python. |
|
|
Python Data Analysis library. |
|
|
The Python Imaging Library. |
|
|
Collection of algorithms for image processing. |
|
|
Machine learning in Python. |
|
|
Python library for scientific computing. |
|
|
Statistics in Python. |
|
|
Library for symbolic mathematics. |
Reference/bibliography managers
Fedora does not currently include any of these tools. However, the developers provide pre-built binaries that are ready to use.
Full featured bibliography manager written in Java. |
|
Zotero client. You can also create an account on the Zotero web-service and use it to sync your bibliography between different machines. |