Utilities
The following general purpose utilties are also part of NeuroFedora.
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The Bokeh Visualization Library |
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Numerical tool for performing uncertainty quantification using polynomial. |
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GNU Octave: Scientific programming language. FOSS, compatible with Matlab scripts. |
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An efficient Python module for manipulation and statistical analysis of graphs (a.k.a. networks). |
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An HDF4/HDF5 viewer. |
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A JSON/UBJSON/MessagePack encoder/decoder for GNU Octave. |
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Missing data visualization module for Python. |
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Virtual environment manager written in pure Python. |
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Parameter exploration toolbox. |
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A Progressbar library to provide visual progress to long running operations. |
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Nature-inspired algorithms for hyper-parameter tuning of Scikit-Learn models. |
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A powerful scientific environment written in Python, for Python, and designed by and for scientists, engineers and data analysts. |
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A new XNAT client that exposes XNAT objects/functions as python objects/functions. |
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wxnatpy is a wxPython widget which allows users to browse the contents of a XNAT repository. |
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A portable data compression/decompression toolbox for GNU Octave. |
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A portable library with easy-to-use data compression/decompression interfaces. |
Python Science Stack
The python-science package group includes commonly used scientific Python libraries.
This can be installed using dnf:
sudo dnf install @python-scienceThe individual packages may also be installed independently:
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The Python plotting package. |
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Jupyter notebook. |
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Fundamental package for array computing with Python. |
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Python Data Analysis library. |
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The Python Imaging Library. |
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Collection of algorithms for image processing. |
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Machine learning in Python. |
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Python library for scientific computing. |
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Statistics in Python. |
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Library for symbolic mathematics. |
Reference/bibliography managers
Fedora does not currently include any of these tools. However, the developers provide pre-built binaries that are ready to use.
Full featured bibliography manager written in Java. |
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Zotero client. You can also create an account on the Zotero web-service and use it to sync your bibliography between different machines. |