Software for data-analysis

brain2mesh

sudo dnf install octave-brain2mesh

A fully automated high-quality brain tetrahedral mesh generation toolbox.

editdistance

sudo dnf install python3-editdistance

A fast implementation of the edit distance (Levenshtein distance) in Python.

efel

sudo dnf install python3-efel

Electrophys Feature Extraction Library.

elephant

sudo dnf install python3-elephant

A package for analysis of electrophysiology data in Python.

iso2mesh

sudo dnf install octave-iso2mesh

A medical-image based 3-D mesh generation and analysis toolkit.

mcxlab

sudo dnf install octave-mcxlab

A 3-D Monte Carlo photon transport simulation toolbox.

MEAUtility

sudo dnf install python-meautility

Python package for multi-electrode array (MEA) handling and stimulation.

mmc

sudo dnf install mmc octave-mmclab mmc-demos mmclab-demos

A 3-D mesh-based Monte Carlo photon transport simulator.

mne

sudo dnf install python3-mne

Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis.

neurodsp

sudo dnf install python3-neurodsp

A Python package to analyze and simulate neural time series, using digital signal processing.

neurosynth

sudo dnf install python3-neurosynth

Large-scale synthesis of functional neuroimaging data.

NiaAML

sudo dnf install python3-niaaml

AutoML in Python.

NiaPy

sudo dnf install python3-niapy

A Python package for solving optimization problems.

nitime

sudo dnf install python3-nitime

Timeseries analysis for neuroscience data.

openmeeg

sudo dnf install openmeeg

A C++ package for solving the forward problems of electroencephalography (EEG) and magnetoencephalography (MEG).

pingouin

sudo dnf install python3-pingouin

Statistical package in Python based on Pandas.

pyelectro

sudo dnf install python3-pyelectro

A library for analysis of electrophysiological data.

pynwb

sudo dnf install python3-pynwb

A Python package for working with NWB files.

PySpike

sudo dnf install python3-pyspike

A Python library for the numerical analysis of spiketrain similarity

SALib

sudo dnf install python3-SALib

Sensitivity Analysis Library.

Spyking circus

sudo dnf install python3-spyking-circus{-mpich,-openmpi}

A fast and scalable solution for spike sorting of large-scale extracellular recordings.